J6_6V39_001

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AUCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6V39|1|AN1|A|230

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6V39|1|AN1|G|52
6V39|1|AN1|G|53
*
6V39|1|AN1|C|186
6V39|1|AN1|G|187
6V39|1|AN1|A|188
6V39|1|AN1|A|189
6V39|1|AN1|C|190
*
6V39|1|AN1|G|221
6V39|1|AN1|G|222
6V39|1|AN1|A|223
6V39|1|AN1|A|224
6V39|1|AN1|A|225
6V39|1|AN1|A|226
6V39|1|AN1|G|227
6V39|1|AN1|A|228
6V39|1|AN1|A|229
6V39|1|AN1|A|230
6V39|1|AN1|U|231
*
6V39|1|AN1|A|238
6V39|1|AN1|G|239
6V39|1|AN1|A|240
6V39|1|AN1|U|241
6V39|1|AN1|U|242
*
6V39|1|AN1|A|269
6V39|1|AN1|U|270
6V39|1|AN1|C|271
6V39|1|AN1|A|272
6V39|1|AN1|G|273
*
6V39|1|AN1|C|425
6V39|1|AN1|U|426
6V39|1|AN1|A|427
6V39|1|AN1|A|428
6V39|1|AN1|A|429
6V39|1|AN1|U|430
6V39|1|AN1|A|431
6V39|1|AN1|C|432

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34