J6_6VU3_001

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6VU3|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VU3|1|a|G|45
6VU3|1|a|G|46
*
6VU3|1|a|C|179
6VU3|1|a|G|180
6VU3|1|a|A|181
6VU3|1|a|A|182
6VU3|1|a|C|183
*
6VU3|1|a|G|214
6VU3|1|a|G|215
6VU3|1|a|A|216
6VU3|1|a|A|217
6VU3|1|a|A|218
6VU3|1|a|A|219
6VU3|1|a|G|220
6VU3|1|a|A|221
6VU3|1|a|A|222
6VU3|1|a|A|223
6VU3|1|a|U|224
*
6VU3|1|a|A|231
6VU3|1|a|G|232
6VU3|1|a|A|233
6VU3|1|a|U|234
6VU3|1|a|U|235
*
6VU3|1|a|A|262
6VU3|1|a|G|263
6VU3|1|a|C|264
6VU3|1|a|A|265
6VU3|1|a|G|266
*
6VU3|1|a|C|426
6VU3|1|a|U|427
6VU3|1|a|A|428
6VU3|1|a|A|429
6VU3|1|a|A|430
6VU3|1|a|U|431
6VU3|1|a|A|432
6VU3|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34