J6_6VWL_001

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6VWL|1|2|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWL|1|2|G|45
6VWL|1|2|G|46
*
6VWL|1|2|C|179
6VWL|1|2|G|180
6VWL|1|2|A|181
6VWL|1|2|A|182
6VWL|1|2|C|183
*
6VWL|1|2|G|214
6VWL|1|2|G|215
6VWL|1|2|A|216
6VWL|1|2|A|217
6VWL|1|2|A|218
6VWL|1|2|A|219
6VWL|1|2|G|220
6VWL|1|2|A|221
6VWL|1|2|A|222
6VWL|1|2|A|223
6VWL|1|2|U|224
*
6VWL|1|2|A|231
6VWL|1|2|G|232
6VWL|1|2|A|233
6VWL|1|2|U|234
6VWL|1|2|U|235
*
6VWL|1|2|A|262
6VWL|1|2|G|263
6VWL|1|2|C|264
6VWL|1|2|A|265
6VWL|1|2|G|266
*
6VWL|1|2|C|426
6VWL|1|2|U|427
6VWL|1|2|A|428
6VWL|1|2|A|429
6VWL|1|2|A|430
6VWL|1|2|U|431
6VWL|1|2|A|432
6VWL|1|2|C|433

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AA

50S ribosomal protein L34