J6_6VWM_001

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6VWM|1|2|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWM|1|2|G|45
6VWM|1|2|G|46
*
6VWM|1|2|C|179
6VWM|1|2|G|180
6VWM|1|2|A|181
6VWM|1|2|A|182
6VWM|1|2|C|183
*
6VWM|1|2|G|214
6VWM|1|2|G|215
6VWM|1|2|A|216
6VWM|1|2|A|217
6VWM|1|2|A|218
6VWM|1|2|A|219
6VWM|1|2|G|220
6VWM|1|2|A|221
6VWM|1|2|A|222
6VWM|1|2|A|223
6VWM|1|2|U|224
*
6VWM|1|2|A|231
6VWM|1|2|G|232
6VWM|1|2|A|233
6VWM|1|2|U|234
6VWM|1|2|U|235
*
6VWM|1|2|A|262
6VWM|1|2|G|263
6VWM|1|2|C|264
6VWM|1|2|A|265
6VWM|1|2|G|266
*
6VWM|1|2|C|426
6VWM|1|2|U|427
6VWM|1|2|A|428
6VWM|1|2|A|429
6VWM|1|2|A|430
6VWM|1|2|U|431
6VWM|1|2|A|432
6VWM|1|2|C|433

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AA

50S ribosomal protein L34