J6_6VYQ_001

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6VYQ|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYQ|1|a|G|45
6VYQ|1|a|G|46
*
6VYQ|1|a|C|179
6VYQ|1|a|G|180
6VYQ|1|a|A|181
6VYQ|1|a|A|182
6VYQ|1|a|C|183
*
6VYQ|1|a|G|214
6VYQ|1|a|G|215
6VYQ|1|a|A|216
6VYQ|1|a|A|217
6VYQ|1|a|A|218
6VYQ|1|a|A|219
6VYQ|1|a|G|220
6VYQ|1|a|A|221
6VYQ|1|a|A|222
6VYQ|1|a|A|223
6VYQ|1|a|U|224
*
6VYQ|1|a|A|231
6VYQ|1|a|G|232
6VYQ|1|a|A|233
6VYQ|1|a|U|234
6VYQ|1|a|U|235
*
6VYQ|1|a|A|262
6VYQ|1|a|G|263
6VYQ|1|a|C|264
6VYQ|1|a|A|265
6VYQ|1|a|G|266
*
6VYQ|1|a|C|426
6VYQ|1|a|U|427
6VYQ|1|a|A|428
6VYQ|1|a|A|429
6VYQ|1|a|A|430
6VYQ|1|a|U|431
6VYQ|1|a|A|432
6VYQ|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34