J6_6VYR_001

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6VYR|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYR|1|a|G|45
6VYR|1|a|G|46
*
6VYR|1|a|C|179
6VYR|1|a|G|180
6VYR|1|a|A|181
6VYR|1|a|A|182
6VYR|1|a|C|183
*
6VYR|1|a|G|214
6VYR|1|a|G|215
6VYR|1|a|A|216
6VYR|1|a|A|217
6VYR|1|a|A|218
6VYR|1|a|A|219
6VYR|1|a|G|220
6VYR|1|a|A|221
6VYR|1|a|A|222
6VYR|1|a|A|223
6VYR|1|a|U|224
*
6VYR|1|a|A|231
6VYR|1|a|G|232
6VYR|1|a|A|233
6VYR|1|a|U|234
6VYR|1|a|U|235
*
6VYR|1|a|A|262
6VYR|1|a|G|263
6VYR|1|a|C|264
6VYR|1|a|A|265
6VYR|1|a|G|266
*
6VYR|1|a|C|426
6VYR|1|a|U|427
6VYR|1|a|A|428
6VYR|1|a|A|429
6VYR|1|a|A|430
6VYR|1|a|U|431
6VYR|1|a|A|432
6VYR|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34