J6_6VYS_001

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6VYS|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYS|1|a|G|45
6VYS|1|a|G|46
*
6VYS|1|a|C|179
6VYS|1|a|G|180
6VYS|1|a|A|181
6VYS|1|a|A|182
6VYS|1|a|C|183
*
6VYS|1|a|G|214
6VYS|1|a|G|215
6VYS|1|a|A|216
6VYS|1|a|A|217
6VYS|1|a|A|218
6VYS|1|a|A|219
6VYS|1|a|G|220
6VYS|1|a|A|221
6VYS|1|a|A|222
6VYS|1|a|A|223
6VYS|1|a|U|224
*
6VYS|1|a|A|231
6VYS|1|a|G|232
6VYS|1|a|A|233
6VYS|1|a|U|234
6VYS|1|a|U|235
*
6VYS|1|a|A|262
6VYS|1|a|G|263
6VYS|1|a|C|264
6VYS|1|a|A|265
6VYS|1|a|G|266
*
6VYS|1|a|C|426
6VYS|1|a|U|427
6VYS|1|a|A|428
6VYS|1|a|A|429
6VYS|1|a|A|430
6VYS|1|a|U|431
6VYS|1|a|A|432
6VYS|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34