J6_6VZ2_001

3D structure

PDB id

6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6VZ2|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZ2|1|a|G|45
6VZ2|1|a|G|46
*
6VZ2|1|a|C|179
6VZ2|1|a|G|180
6VZ2|1|a|A|181
6VZ2|1|a|A|182
6VZ2|1|a|C|183
*
6VZ2|1|a|G|214
6VZ2|1|a|G|215
6VZ2|1|a|A|216
6VZ2|1|a|A|217
6VZ2|1|a|A|218
6VZ2|1|a|A|219
6VZ2|1|a|G|220
6VZ2|1|a|A|221
6VZ2|1|a|A|222
6VZ2|1|a|A|223
6VZ2|1|a|U|224
*
6VZ2|1|a|A|231
6VZ2|1|a|G|232
6VZ2|1|a|A|233
6VZ2|1|a|U|234
6VZ2|1|a|U|235
*
6VZ2|1|a|A|262
6VZ2|1|a|G|263
6VZ2|1|a|C|264
6VZ2|1|a|A|265
6VZ2|1|a|G|266
*
6VZ2|1|a|C|426
6VZ2|1|a|U|427
6VZ2|1|a|A|428
6VZ2|1|a|A|429
6VZ2|1|a|A|430
6VZ2|1|a|U|431
6VZ2|1|a|A|432
6VZ2|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34