J6_6VZJ_001

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6VZJ|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZJ|1|a|G|45
6VZJ|1|a|G|46
*
6VZJ|1|a|C|179
6VZJ|1|a|G|180
6VZJ|1|a|A|181
6VZJ|1|a|A|182
6VZJ|1|a|C|183
*
6VZJ|1|a|G|214
6VZJ|1|a|G|215
6VZJ|1|a|A|216
6VZJ|1|a|A|217
6VZJ|1|a|A|218
6VZJ|1|a|A|219
6VZJ|1|a|G|220
6VZJ|1|a|A|221
6VZJ|1|a|A|222
6VZJ|1|a|A|223
6VZJ|1|a|U|224
*
6VZJ|1|a|A|231
6VZJ|1|a|G|232
6VZJ|1|a|A|233
6VZJ|1|a|U|234
6VZJ|1|a|U|235
*
6VZJ|1|a|A|262
6VZJ|1|a|G|263
6VZJ|1|a|C|264
6VZJ|1|a|A|265
6VZJ|1|a|G|266
*
6VZJ|1|a|C|426
6VZJ|1|a|U|427
6VZJ|1|a|A|428
6VZJ|1|a|A|429
6VZJ|1|a|A|430
6VZJ|1|a|U|431
6VZJ|1|a|A|432
6VZJ|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34