J6_6WDA_001

3D structure

PDB id

6WDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6WDA|1|1|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDA|1|1|G|45
6WDA|1|1|G|46
*
6WDA|1|1|C|179
6WDA|1|1|G|180
6WDA|1|1|A|181
6WDA|1|1|A|182
6WDA|1|1|C|183
*
6WDA|1|1|G|214
6WDA|1|1|G|215
6WDA|1|1|A|216
6WDA|1|1|A|217
6WDA|1|1|A|218
6WDA|1|1|A|219
6WDA|1|1|G|220
6WDA|1|1|A|221
6WDA|1|1|A|222
6WDA|1|1|A|223
6WDA|1|1|U|224
*
6WDA|1|1|A|231
6WDA|1|1|G|232
6WDA|1|1|A|233
6WDA|1|1|U|234
6WDA|1|1|U|235
*
6WDA|1|1|A|262
6WDA|1|1|G|263
6WDA|1|1|C|264
6WDA|1|1|A|265
6WDA|1|1|G|266
*
6WDA|1|1|C|426
6WDA|1|1|U|427
6WDA|1|1|A|428
6WDA|1|1|A|429
6WDA|1|1|A|430
6WDA|1|1|U|431
6WDA|1|1|A|432
6WDA|1|1|C|433

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34