Loop J6_6WDR

3D structure

PDB id: 6WDR (explore in PDB, NAKB, or RNA 3D Hub)
Description: Subunit joining exposes nascent pre-40S rRNA for processing and quality control
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å

Loop

Sequence: UGGAGCCUGCGGCUUAAUUUG*CGGGGAAACUCACCAGGUCCAGACAC*GUGGGUGGUGGUGCAUGGCCGUUCUUAG*CGAGAC*GCAAUAACAGGUCUGUGAUGCCCUUAGACGUUCUGGGCCGCACGCGCGCUAC*GGAA
Length: 137 nucleotides
Bulged bases: 6WDR|1|2|U|1339, 6WDR|1|2|G|1351, 6WDR|1|2|G|1353, 6WDR|1|2|A|1354, 6WDR|1|2|A|1355, 6WDR|1|2|G|1420, 6WDR|1|2|U|1421, 6WDR|1|2|C|1431, 6WDR|1|2|U|1435, 6WDR|1|2|U|1438, 6WDR|1|2|A|1573, 6WDR|1|2|A|1574, 6WDR|1|2|A|1577, 6WDR|1|2|C|1578, 6WDR|1|2|A|1579, 6WDR|1|2|C|1583, 6WDR|1|2|U|1584, 6WDR|1|2|G|1590, 6WDR|1|2|C|1591, 6WDR|1|2|C|1593, 6WDR|1|2|U|1595, 6WDR|1|2|A|1596, 6WDR|1|2|A|1598, 6WDR|1|2|C|1613, 6WDR|1|2|C|1615
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6WDR|1|2|U|1320
6WDR|1|2|G|1321
6WDR|1|2|G|1322
6WDR|1|2|A|1323
6WDR|1|2|G|1324
6WDR|1|2|C|1325
6WDR|1|2|C|1326
6WDR|1|2|U|1327
6WDR|1|2|G|1328
6WDR|1|2|C|1329
6WDR|1|2|G|1330
6WDR|1|2|G|1331
6WDR|1|2|C|1332
6WDR|1|2|U|1333
6WDR|1|2|U|1334
6WDR|1|2|A|1335
6WDR|1|2|A|1336
6WDR|1|2|U|1337
6WDR|1|2|U|1338
6WDR|1|2|U|1339
6WDR|1|2|G|1340
*
6WDR|1|2|C|1349
6WDR|1|2|G|1350
6WDR|1|2|G|1351
6WDR|1|2|G|1352
6WDR|1|2|G|1353
6WDR|1|2|A|1354
6WDR|1|2|A|1355
6WDR|1|2|A|1356
6WDR|1|2|C|1357
6WDR|1|2|U|1358
6WDR|1|2|C|1359
6WDR|1|2|A|1360
6WDR|1|2|C|1361
6WDR|1|2|C|1362
6WDR|1|2|A|1363
6WDR|1|2|G|1364
6WDR|1|2|G|1365
6WDR|1|2|U|1366
6WDR|1|2|C|1367
6WDR|1|2|C|1368
6WDR|1|2|A|1369
6WDR|1|2|G|1370
6WDR|1|2|A|1371
6WDR|1|2|C|1372
6WDR|1|2|A|1373
6WDR|1|2|C|1374
*
6WDR|1|2|G|1413
6WDR|1|2|U|1414
6WDR|1|2|G|1415
6WDR|1|2|G|1416
6WDR|1|2|G|1417
6WDR|1|2|U|1418
6WDR|1|2|G|1419
6WDR|1|2|G|1420
6WDR|1|2|U|1421
6WDR|1|2|G|1422
6WDR|1|2|G|1423
6WDR|1|2|U|1424
6WDR|1|2|G|1425
6WDR|1|2|C|1426
6WDR|1|2|A|1427
6WDR|1|2|U|1428
6WDR|1|2|G|1429
6WDR|1|2|G|1430
6WDR|1|2|C|1431
6WDR|1|2|C|1432
6WDR|1|2|G|1433
6WDR|1|2|U|1434
6WDR|1|2|U|1435
6WDR|1|2|C|1436
6WDR|1|2|U|1437
6WDR|1|2|U|1438
6WDR|1|2|A|1439
6WDR|1|2|G|1440
*
6WDR|1|2|C|1479
6WDR|1|2|G|1480
6WDR|1|2|A|1481
6WDR|1|2|G|1482
6WDR|1|2|A|1483
6WDR|1|2|C|1484
*
6WDR|1|2|G|1571
6WDR|1|2|C|1572
6WDR|1|2|A|1573
6WDR|1|2|A|1574
6WDR|1|2|U|1575
6WDR|1|2|A|1576
6WDR|1|2|A|1577
6WDR|1|2|C|1578
6WDR|1|2|A|1579
6WDR|1|2|G|1580
6WDR|1|2|G|1581
6WDR|1|2|U|1582
6WDR|1|2|C|1583
6WDR|1|2|U|1584
6WDR|1|2|G|1585
6WDR|1|2|U|1586
6WDR|1|2|G|1587
6WDR|1|2|A|1588
6WDR|1|2|U|1589
6WDR|1|2|G|1590
6WDR|1|2|C|1591
6WDR|1|2|C|1592
6WDR|1|2|C|1593
6WDR|1|2|U|1594
6WDR|1|2|U|1595
6WDR|1|2|A|1596
6WDR|1|2|G|1597
6WDR|1|2|A|1598
6WDR|1|2|C|1599
6WDR|1|2|G|1600
6WDR|1|2|U|1601
6WDR|1|2|U|1602
6WDR|1|2|C|1603
6WDR|1|2|U|1604
6WDR|1|2|G|1605
6WDR|1|2|G|1606
6WDR|1|2|G|1607
6WDR|1|2|C|1608
6WDR|1|2|C|1609
6WDR|1|2|G|1610
6WDR|1|2|C|1611
6WDR|1|2|A|1612
6WDR|1|2|C|1613
6WDR|1|2|G|1614
6WDR|1|2|C|1615
6WDR|1|2|G|1616
6WDR|1|2|C|1617
6WDR|1|2|G|1618
6WDR|1|2|C|1619
6WDR|1|2|U|1620
6WDR|1|2|A|1621
6WDR|1|2|C|1622
*
6WDR|1|2|G|1726
6WDR|1|2|G|1727
6WDR|1|2|A|1728
6WDR|1|2|A|1729

Current chains

Chain 2: 20S ribosomal RNA

Nearby chains

Chain C: 40S ribosomal protein S2
Chain D: 40S ribosomal protein S3
Chain F: 40S ribosomal protein S5
Chain K: 40S ribosomal protein S10-A
Chain M: 40S ribosomal protein S12
Chain P: 40S ribosomal protein S15
Chain Q: 40S ribosomal protein S16-A
Chain R: 40S ribosomal protein S17-A
Chain S: 40S ribosomal protein S18-A
Chain T: 40S ribosomal protein S19-A
Chain U: 40S ribosomal protein S20
Chain d: 40S ribosomal protein S29-A
Chain f: Ubiquitin-40S ribosomal protein S31

J6_6WDR_001