J6_6WNV_001

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6WNV|1|4|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WNV|1|4|G|45
6WNV|1|4|G|46
*
6WNV|1|4|C|179
6WNV|1|4|G|180
6WNV|1|4|A|181
6WNV|1|4|A|182
6WNV|1|4|C|183
*
6WNV|1|4|G|214
6WNV|1|4|G|215
6WNV|1|4|A|216
6WNV|1|4|A|217
6WNV|1|4|A|218
6WNV|1|4|A|219
6WNV|1|4|G|220
6WNV|1|4|A|221
6WNV|1|4|A|222
6WNV|1|4|A|223
6WNV|1|4|U|224
*
6WNV|1|4|A|231
6WNV|1|4|G|232
6WNV|1|4|A|233
6WNV|1|4|U|234
6WNV|1|4|U|235
*
6WNV|1|4|A|262
6WNV|1|4|G|263
6WNV|1|4|C|264
6WNV|1|4|A|265
6WNV|1|4|G|266
*
6WNV|1|4|C|426
6WNV|1|4|U|427
6WNV|1|4|A|428
6WNV|1|4|A|429
6WNV|1|4|A|430
6WNV|1|4|U|431
6WNV|1|4|A|432
6WNV|1|4|C|433

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34