Loop J6_6WNV

3D structure

PDB id: 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
Description: 70S ribosome without free 5S rRNA and with a perturbed PTC
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

Loop

Sequence: UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 6WNV|1|4|U|2204, 6WNV|1|4|U|2518, 6WNV|1|4|G|2556, 6WNV|1|4|A|2558, 6WNV|1|4|U|2559
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6WNV|1|4|U|2202
6WNV|1|4|U|2203
6WNV|1|4|U|2204
6WNV|1|4|A|2205
*
6WNV|1|4|U|2371
6WNV|1|4|U|2372
6WNV|1|4|U|2373
6WNV|1|4|G|2374
*
6WNV|1|4|C|2386
6WNV|1|4|U|2387
*
6WNV|1|4|A|2409
6WNV|1|4|G|2410
6WNV|1|4|C|2411
6WNV|1|4|A|2412
*
6WNV|1|4|U|2512
6WNV|1|4|C|2513
6WNV|1|4|A|2514
6WNV|1|4|U|2515
6WNV|1|4|A|2516
6WNV|1|4|G|2517
6WNV|1|4|U|2518
6WNV|1|4|G|2519
6WNV|1|4|A|2520
6WNV|1|4|U|2521
6WNV|1|4|C|2522
6WNV|1|4|C|2523
*
6WNV|1|4|G|2549
6WNV|1|4|C|2550
6WNV|1|4|U|2551
6WNV|1|4|C|2552
6WNV|1|4|A|2553
6WNV|1|4|A|2554
6WNV|1|4|C|2555
6WNV|1|4|G|2556
6WNV|1|4|G|2557
6WNV|1|4|A|2558
6WNV|1|4|U|2559
6WNV|1|4|A|2560
6WNV|1|4|A|2561
6WNV|1|4|A|2562
6WNV|1|4|A|2563

Current chains

Chain 4: 23s-5s joint ribosomal RNA

Nearby chains

Chain E: 50S ribosomal protein L35
Chain b: 50S ribosomal protein L2
Chain l: 50S ribosomal protein L15
Chain w: 50S ribosomal protein L27
Chain x: 50S ribosomal protein L28

J6_6WNV_002