J6_6XDQ_001
3D structure
- PDB id
- 6XDQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC
- Length
- 36 nucleotides
- Bulged bases
- 6XDQ|1|a|A|223
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XDQ|1|a|G|45
6XDQ|1|a|G|46
*
6XDQ|1|a|C|179
6XDQ|1|a|G|180
6XDQ|1|a|A|181
6XDQ|1|a|A|182
6XDQ|1|a|C|183
*
6XDQ|1|a|G|214
6XDQ|1|a|G|215
6XDQ|1|a|A|216
6XDQ|1|a|A|217
6XDQ|1|a|A|218
6XDQ|1|a|A|219
6XDQ|1|a|G|220
6XDQ|1|a|A|221
6XDQ|1|a|A|222
6XDQ|1|a|A|223
6XDQ|1|a|U|224
*
6XDQ|1|a|A|231
6XDQ|1|a|G|232
6XDQ|1|a|A|233
6XDQ|1|a|U|234
6XDQ|1|a|U|235
*
6XDQ|1|a|A|262
6XDQ|1|a|G|263
6XDQ|1|a|C|264
6XDQ|1|a|A|265
6XDQ|1|a|G|266
*
6XDQ|1|a|C|426
6XDQ|1|a|U|427
6XDQ|1|a|A|428
6XDQ|1|a|A|429
6XDQ|1|a|A|430
6XDQ|1|a|U|431
6XDQ|1|a|A|432
6XDQ|1|a|C|433
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain m
- 50S ribosomal protein L34
Coloring options: