J6_6XDR_001

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6XDR|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XDR|1|a|G|45
6XDR|1|a|G|46
*
6XDR|1|a|C|179
6XDR|1|a|G|180
6XDR|1|a|A|181
6XDR|1|a|A|182
6XDR|1|a|C|183
*
6XDR|1|a|G|214
6XDR|1|a|G|215
6XDR|1|a|A|216
6XDR|1|a|A|217
6XDR|1|a|A|218
6XDR|1|a|A|219
6XDR|1|a|G|220
6XDR|1|a|A|221
6XDR|1|a|A|222
6XDR|1|a|A|223
6XDR|1|a|U|224
*
6XDR|1|a|A|231
6XDR|1|a|G|232
6XDR|1|a|A|233
6XDR|1|a|U|234
6XDR|1|a|U|235
*
6XDR|1|a|A|262
6XDR|1|a|G|263
6XDR|1|a|C|264
6XDR|1|a|A|265
6XDR|1|a|G|266
*
6XDR|1|a|C|426
6XDR|1|a|U|427
6XDR|1|a|A|428
6XDR|1|a|A|429
6XDR|1|a|A|430
6XDR|1|a|U|431
6XDR|1|a|A|432
6XDR|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34