J6_6XGF_001

3D structure

PDB id

6XGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6XGF|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XGF|1|a|G|45
6XGF|1|a|G|46
*
6XGF|1|a|C|179
6XGF|1|a|G|180
6XGF|1|a|A|181
6XGF|1|a|A|182
6XGF|1|a|C|183
*
6XGF|1|a|G|214
6XGF|1|a|G|215
6XGF|1|a|A|216
6XGF|1|a|A|217
6XGF|1|a|A|218
6XGF|1|a|A|219
6XGF|1|a|G|220
6XGF|1|a|A|221
6XGF|1|a|A|222
6XGF|1|a|A|223
6XGF|1|a|U|224
*
6XGF|1|a|A|231
6XGF|1|a|G|232
6XGF|1|a|A|233
6XGF|1|a|U|234
6XGF|1|a|U|235
*
6XGF|1|a|A|262
6XGF|1|a|G|263
6XGF|1|a|C|264
6XGF|1|a|A|265
6XGF|1|a|G|266
*
6XGF|1|a|C|426
6XGF|1|a|U|427
6XGF|1|a|A|428
6XGF|1|a|A|429
6XGF|1|a|A|430
6XGF|1|a|U|431
6XGF|1|a|A|432
6XGF|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34