J6_6XIJ_001

3D structure

PDB id

6XIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A (TTC-A) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6XIJ|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIJ|1|a|G|45
6XIJ|1|a|G|46
*
6XIJ|1|a|C|179
6XIJ|1|a|G|180
6XIJ|1|a|A|181
6XIJ|1|a|A|182
6XIJ|1|a|C|183
*
6XIJ|1|a|G|214
6XIJ|1|a|G|215
6XIJ|1|a|A|216
6XIJ|1|a|A|217
6XIJ|1|a|A|218
6XIJ|1|a|A|219
6XIJ|1|a|G|220
6XIJ|1|a|A|221
6XIJ|1|a|A|222
6XIJ|1|a|A|223
6XIJ|1|a|U|224
*
6XIJ|1|a|A|231
6XIJ|1|a|G|232
6XIJ|1|a|A|233
6XIJ|1|a|U|234
6XIJ|1|a|U|235
*
6XIJ|1|a|A|262
6XIJ|1|a|G|263
6XIJ|1|a|C|264
6XIJ|1|a|A|265
6XIJ|1|a|G|266
*
6XIJ|1|a|C|426
6XIJ|1|a|U|427
6XIJ|1|a|A|428
6XIJ|1|a|A|429
6XIJ|1|a|A|430
6XIJ|1|a|U|431
6XIJ|1|a|A|432
6XIJ|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34