J6_6XQD_001

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

6XQD|1|1A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XQD|1|1A|G|44
6XQD|1|1A|C|45
*
6XQD|1|1A|G|179
6XQD|1|1A|G|180
6XQD|1|1A|A|181
6XQD|1|1A|A|182
6XQD|1|1A|C|183
*
6XQD|1|1A|G|214
6XQD|1|1A|G|215
6XQD|1|1A|A|216
6XQD|1|1A|G|217
6XQD|1|1A|A|218
6XQD|1|1A|G|219
6XQD|1|1A|G|220
6XQD|1|1A|A|221
6XQD|1|1A|A|222
6XQD|1|1A|A|223
6XQD|1|1A|G|224
*
6XQD|1|1A|C|231
6XQD|1|1A|G|232
6XQD|1|1A|A|233
6XQD|1|1A|C|234
6XQD|1|1A|U|235
*
6XQD|1|1A|A|262
6XQD|1|1A|C|263
6XQD|1|1A|C|264
6XQD|1|1A|A|265
6XQD|1|1A|G|266
*
6XQD|1|1A|C|426
6XQD|1|1A|U|427
6XQD|1|1A|A|428
6XQD|1|1A|A|429
6XQD|1|1A|G|430
6XQD|1|1A|U|431
6XQD|1|1A|A|432
6XQD|1|1A|C|433

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34