J6_6XQE_002

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

6XQE|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XQE|1|2A|G|44
6XQE|1|2A|C|45
*
6XQE|1|2A|G|179
6XQE|1|2A|G|180
6XQE|1|2A|A|181
6XQE|1|2A|A|182
6XQE|1|2A|C|183
*
6XQE|1|2A|G|214
6XQE|1|2A|G|215
6XQE|1|2A|A|216
6XQE|1|2A|G|217
6XQE|1|2A|A|218
6XQE|1|2A|G|219
6XQE|1|2A|G|220
6XQE|1|2A|A|221
6XQE|1|2A|A|222
6XQE|1|2A|A|223
6XQE|1|2A|G|224
*
6XQE|1|2A|C|231
6XQE|1|2A|G|232
6XQE|1|2A|A|233
6XQE|1|2A|C|234
6XQE|1|2A|U|235
*
6XQE|1|2A|A|262
6XQE|1|2A|C|263
6XQE|1|2A|C|264
6XQE|1|2A|A|265
6XQE|1|2A|G|266
*
6XQE|1|2A|C|426
6XQE|1|2A|U|427
6XQE|1|2A|A|428
6XQE|1|2A|A|429
6XQE|1|2A|G|430
6XQE|1|2A|U|431
6XQE|1|2A|A|432
6XQE|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34