J6_6XZ7_002

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

6XZ7|1|A|U|2076, 6XZ7|1|A|A|2388, 6XZ7|1|A|U|2390, 6XZ7|1|A|G|2428, 6XZ7|1|A|A|2430||A, 6XZ7|1|A|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XZ7|1|A|U|2074
6XZ7|1|A|U|2075
6XZ7|1|A|U|2076
6XZ7|1|A|A|2077
*
6XZ7|1|A|U|2243
6XZ7|1|A|U|2244
6XZ7|1|A|U|2245
6XZ7|1|A|G|2246
*
6XZ7|1|A|C|2258
6XZ7|1|A|U|2259
*
6XZ7|1|A|A|2281
6XZ7|1|A|G|2282
6XZ7|1|A|C|2283
6XZ7|1|A|A|2284
*
6XZ7|1|A|U|2384
6XZ7|1|A|C|2385
6XZ7|1|A|A|2386
6XZ7|1|A|U|2387
6XZ7|1|A|A|2388
6XZ7|1|A|G|2389
6XZ7|1|A|U|2390
6XZ7|1|A|G|2391
6XZ7|1|A|A|2392
6XZ7|1|A|U|2393
6XZ7|1|A|C|2394
6XZ7|1|A|C|2395
*
6XZ7|1|A|G|2421
6XZ7|1|A|C|2422
6XZ7|1|A|U|2423
6XZ7|1|A|C|2424
6XZ7|1|A|A|2425
6XZ7|1|A|A|2426
6XZ7|1|A|C|2427
6XZ7|1|A|G|2428
6XZ7|1|A|G|2429||A
6XZ7|1|A|A|2430||A
6XZ7|1|A|U|2431
6XZ7|1|A|A|2432
6XZ7|1|A|A|2433
6XZ7|1|A|A|2434
6XZ7|1|A|A|2435

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain L

50S ribosomal protein L15

Chain W

50S ribosomal protein L27

Chain X

50S ribosomal protein L28

Chain b

50S ribosomal protein L33

Chain d

50S ribosomal protein L35