J6_6XZB_001

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6XZB|1|A2|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XZB|1|A2|G|45
6XZB|1|A2|G|46
*
6XZB|1|A2|C|179
6XZB|1|A2|G|180
6XZB|1|A2|A|181
6XZB|1|A2|A|182
6XZB|1|A2|C|183
*
6XZB|1|A2|G|214
6XZB|1|A2|G|215
6XZB|1|A2|A|216
6XZB|1|A2|A|217
6XZB|1|A2|A|218
6XZB|1|A2|A|219
6XZB|1|A2|G|220
6XZB|1|A2|A|221
6XZB|1|A2|A|222
6XZB|1|A2|A|223
6XZB|1|A2|U|224
*
6XZB|1|A2|A|231
6XZB|1|A2|G|232
6XZB|1|A2|A|233
6XZB|1|A2|U|234
6XZB|1|A2|U|235
*
6XZB|1|A2|A|262
6XZB|1|A2|G|263
6XZB|1|A2|C|264
6XZB|1|A2|A|265
6XZB|1|A2|G|266
*
6XZB|1|A2|C|426
6XZB|1|A2|U|427
6XZB|1|A2|A|428
6XZB|1|A2|A|429
6XZB|1|A2|A|430
6XZB|1|A2|U|431
6XZB|1|A2|A|432
6XZB|1|A2|C|433

Current chains

Chain A2

23S rRNA

Nearby chains

Chain c2

50S ribosomal protein L34