3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
6XZB|1|A2|U|2076, 6XZB|1|A2|A|2388, 6XZB|1|A2|U|2390, 6XZB|1|A2|G|2428, 6XZB|1|A2|A|2430||A, 6XZB|1|A2|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XZB|1|A2|U|2074
6XZB|1|A2|U|2075
6XZB|1|A2|U|2076
6XZB|1|A2|A|2077
*
6XZB|1|A2|U|2243
6XZB|1|A2|U|2244
6XZB|1|A2|U|2245
6XZB|1|A2|G|2246
*
6XZB|1|A2|C|2258
6XZB|1|A2|U|2259
*
6XZB|1|A2|A|2281
6XZB|1|A2|G|2282
6XZB|1|A2|C|2283
6XZB|1|A2|A|2284
*
6XZB|1|A2|U|2384
6XZB|1|A2|C|2385
6XZB|1|A2|A|2386
6XZB|1|A2|U|2387
6XZB|1|A2|A|2388
6XZB|1|A2|G|2389
6XZB|1|A2|U|2390
6XZB|1|A2|G|2391
6XZB|1|A2|A|2392
6XZB|1|A2|U|2393
6XZB|1|A2|C|2394
6XZB|1|A2|C|2395
*
6XZB|1|A2|G|2421
6XZB|1|A2|C|2422
6XZB|1|A2|U|2423
6XZB|1|A2|C|2424
6XZB|1|A2|A|2425
6XZB|1|A2|A|2426
6XZB|1|A2|C|2427
6XZB|1|A2|G|2428
6XZB|1|A2|G|2429||A
6XZB|1|A2|A|2430||A
6XZB|1|A2|U|2431
6XZB|1|A2|A|2432
6XZB|1|A2|A|2433
6XZB|1|A2|A|2434
6XZB|1|A2|A|2435

Current chains

Chain A2
23S rRNA

Nearby chains

Chain C2
50S ribosomal protein L2
Chain L2
50S ribosomal protein L15
Chain W2
50S ribosomal protein L27
Chain X2
50S ribosomal protein L28
Chain b2
50S ribosomal protein L33
Chain d2
50S ribosomal protein L35

Coloring options:

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