J6_6XZB_002

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

6XZB|1|A2|U|2076, 6XZB|1|A2|A|2388, 6XZB|1|A2|U|2390, 6XZB|1|A2|G|2428, 6XZB|1|A2|A|2430||A, 6XZB|1|A2|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XZB|1|A2|U|2074
6XZB|1|A2|U|2075
6XZB|1|A2|U|2076
6XZB|1|A2|A|2077
*
6XZB|1|A2|U|2243
6XZB|1|A2|U|2244
6XZB|1|A2|U|2245
6XZB|1|A2|G|2246
*
6XZB|1|A2|C|2258
6XZB|1|A2|U|2259
*
6XZB|1|A2|A|2281
6XZB|1|A2|G|2282
6XZB|1|A2|C|2283
6XZB|1|A2|A|2284
*
6XZB|1|A2|U|2384
6XZB|1|A2|C|2385
6XZB|1|A2|A|2386
6XZB|1|A2|U|2387
6XZB|1|A2|A|2388
6XZB|1|A2|G|2389
6XZB|1|A2|U|2390
6XZB|1|A2|G|2391
6XZB|1|A2|A|2392
6XZB|1|A2|U|2393
6XZB|1|A2|C|2394
6XZB|1|A2|C|2395
*
6XZB|1|A2|G|2421
6XZB|1|A2|C|2422
6XZB|1|A2|U|2423
6XZB|1|A2|C|2424
6XZB|1|A2|A|2425
6XZB|1|A2|A|2426
6XZB|1|A2|C|2427
6XZB|1|A2|G|2428
6XZB|1|A2|G|2429||A
6XZB|1|A2|A|2430||A
6XZB|1|A2|U|2431
6XZB|1|A2|A|2432
6XZB|1|A2|A|2433
6XZB|1|A2|A|2434
6XZB|1|A2|A|2435

Current chains

Chain A2

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L2

Chain L2

50S ribosomal protein L15

Chain W2

50S ribosomal protein L27

Chain X2

50S ribosomal protein L28

Chain b2

50S ribosomal protein L33

Chain d2

50S ribosomal protein L35