3D structure

PDB id
6Y57 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of human ribosome in hybrid-PRE state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
Length
38 nucleotides
Bulged bases
6Y57|1|L5|G|3922, 6Y57|1|L5|A|4376, 6Y57|1|L5|A|4378, 6Y57|1|L5|A|4379
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Y57|1|L5|U|3920
6Y57|1|L5|U|3921
6Y57|1|L5|G|3922
6Y57|1|L5|A|3923
*
6Y57|1|L5|U|4188
6Y57|1|L5|U|4189
6Y57|1|L5|U|4190
6Y57|1|L5|G|4191
*
6Y57|1|L5|C|4204
6Y57|1|L5|A|4205
*
6Y57|1|L5|U|4227
6Y57|1|L5|G|4228
6Y57|1|L5|U|4229
6Y57|1|L5|C|4230
*
6Y57|1|L5|G|4331
6Y57|1|L5|C|4332
6Y57|1|L5|C|4333
6Y57|1|L5|U|4334
6Y57|1|L5|C|4335
6Y57|1|L5|A|4336
6Y57|1|L5|C|4337
6Y57|1|L5|G|4338
6Y57|1|L5|A|4339
6Y57|1|L5|U|4340
6Y57|1|L5|C|4341
6Y57|1|L5|C|4342
*
6Y57|1|L5|G|4370
6Y57|1|L5|G|4371
6Y57|1|L5|U|4372
6Y57|1|L5|G|4373
6Y57|1|L5|U|4374
6Y57|1|L5|C|4375
6Y57|1|L5|A|4376
6Y57|1|L5|G|4377
6Y57|1|L5|A|4378
6Y57|1|L5|A|4379
6Y57|1|L5|A|4380
6Y57|1|L5|A|4381

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain B4
Transfer RNA; tRNA
Chain LA
60S ribosomal protein L8
Chain LN
60S ribosomal protein L15
Chain LQ
60S ribosomal protein L18
Chain LT
60S ribosomal protein L21
Chain La
60S ribosomal protein L27a
Chain Lb
60S ribosomal protein L29
Chain Lo
60S ribosomal protein L36a

Coloring options:

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