J6_6Y69_001

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6Y69|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y69|1|A|G|45
6Y69|1|A|G|46
*
6Y69|1|A|C|179
6Y69|1|A|G|180
6Y69|1|A|A|181
6Y69|1|A|A|182
6Y69|1|A|C|183
*
6Y69|1|A|G|214
6Y69|1|A|G|215
6Y69|1|A|A|216
6Y69|1|A|A|217
6Y69|1|A|A|218
6Y69|1|A|A|219
6Y69|1|A|G|220
6Y69|1|A|A|221
6Y69|1|A|A|222
6Y69|1|A|A|223
6Y69|1|A|U|224
*
6Y69|1|A|A|231
6Y69|1|A|G|232
6Y69|1|A|A|233
6Y69|1|A|U|234
6Y69|1|A|U|235
*
6Y69|1|A|A|262
6Y69|1|A|G|263
6Y69|1|A|C|264
6Y69|1|A|A|265
6Y69|1|A|G|266
*
6Y69|1|A|C|426
6Y69|1|A|U|427
6Y69|1|A|A|428
6Y69|1|A|A|429
6Y69|1|A|A|430
6Y69|1|A|U|431
6Y69|1|A|A|432
6Y69|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34