3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
Length
38 nucleotides
Bulged bases
6Y6X|1|L5|A|66, 6Y6X|1|L8|U|34
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Y6X|1|L5|G|21
6Y6X|1|L5|G|22
6Y6X|1|L5|C|23
6Y6X|1|L5|G|24
6Y6X|1|L5|A|25
6Y6X|1|L5|C|26
*
6Y6X|1|L5|G|57
6Y6X|1|L5|G|58
6Y6X|1|L5|A|59
6Y6X|1|L5|G|60
6Y6X|1|L5|A|61
6Y6X|1|L5|A|62
6Y6X|1|L5|G|63
6Y6X|1|L5|A|64
6Y6X|1|L5|A|65
6Y6X|1|L5|A|66
6Y6X|1|L5|C|67
*
6Y6X|1|L5|G|74
6Y6X|1|L5|G|75
6Y6X|1|L5|A|76
6Y6X|1|L5|U|77
6Y6X|1|L5|U|78
*
6Y6X|1|L5|A|105
6Y6X|1|L5|A|106
6Y6X|1|L5|G|107
6Y6X|1|L5|A|108
6Y6X|1|L5|G|109
*
6Y6X|1|L5|C|332
6Y6X|1|L5|U|333
6Y6X|1|L5|A|334
6Y6X|1|L5|A|335
6Y6X|1|L5|A|336
6Y6X|1|L5|U|337
6Y6X|1|L5|A|338
6Y6X|1|L5|C|339
*
6Y6X|1|L8|G|33
6Y6X|1|L8|U|34
6Y6X|1|L8|C|35

Current chains

Chain L5
28S ribosomal RNA
Chain L8
5.8S ribosomal RNA

Nearby chains

Chain LL
60S ribosomal protein L13
Chain LN
60S ribosomal protein L15
Chain Lh
60S ribosomal protein L35
Chain Li
60S ribosomal protein L36
Chain Lj
60S ribosomal protein L37

Coloring options:

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