J6_6YAN_002
3D structure
- PDB id
- 6YAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.48 Å
Loop
- Sequence
- UGGAUCUUG*CCCCUUG*CGUU*AUGGAAUAG*UGAUUAAGAG*CAUUA
- Length
- 44 nucleotides
- Bulged bases
- 6YAN|1|2|U|678, 6YAN|1|2|U|739, 6YAN|1|2|G|794, 6YAN|1|2|U|867, 6YAN|1|2|G|917
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YAN|1|2|U|672
6YAN|1|2|G|673
6YAN|1|2|G|674
6YAN|1|2|A|675
6YAN|1|2|U|676
6YAN|1|2|C|677
6YAN|1|2|U|678
6YAN|1|2|U|679
6YAN|1|2|G|680
*
6YAN|1|2|C|734
6YAN|1|2|C|735
6YAN|1|2|C|736
6YAN|1|2|C|737
6YAN|1|2|U|738
6YAN|1|2|U|739
6YAN|1|2|G|740
*
6YAN|1|2|C|793
6YAN|1|2|G|794
6YAN|1|2|U|795
6YAN|1|2|U|796
*
6YAN|1|2|A|861
6YAN|1|2|U|862
6YAN|1|2|G|863
6YAN|1|2|G|864
6YAN|1|2|A|865
6YAN|1|2|A|866
6YAN|1|2|U|867
6YAN|1|2|A|868
6YAN|1|2|G|869
*
6YAN|1|2|U|910
6YAN|1|2|G|911
6YAN|1|2|A|912
6YAN|1|2|U|913
6YAN|1|2|U|914
6YAN|1|2|A|915
6YAN|1|2|A|916
6YAN|1|2|G|917
6YAN|1|2|A|918
6YAN|1|2|G|919
*
6YAN|1|2|C|1015
6YAN|1|2|A|1016
6YAN|1|2|U|1017
6YAN|1|2|U|1018
6YAN|1|2|A|1019
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain J
- ribosomal protein eS7
- Chain N
- Ribosomal protein S11
- Chain P
- ribosomal protein uS15
- Chain Y
- Ribosomal protein S15a
- Chain Z
- 40S ribosomal protein uS12
- Chain c
- 40S ribosomal protein S27
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