J6_6YDW_002
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UUUA*UUCG*CU*AGU*ACUUAUUGAUCC*GAUCAACGGAACAA
- Length
- 39 nucleotides
- Bulged bases
- 6YDW|1|BA|U|1071, 6YDW|1|BA|C|1226, 6YDW|1|BA|G|1252, 6YDW|1|BA|A|1254, 6YDW|1|BA|A|1257
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YDW|1|BA|U|1069
6YDW|1|BA|U|1070
6YDW|1|BA|U|1071
6YDW|1|BA|A|1072
*
6YDW|1|BA|U|1143
6YDW|1|BA|U|1144
6YDW|1|BA|C|1145
6YDW|1|BA|G|1146
*
6YDW|1|BA|C|1158
6YDW|1|BA|U|1159
*
6YDW|1|BA|A|1181
6YDW|1|BA|G|1182
6YDW|1|BA|U|1183
*
6YDW|1|BA|A|1225
6YDW|1|BA|C|1226
6YDW|1|BA|U|1227
6YDW|1|BA|U|1228
6YDW|1|BA|A|1229
6YDW|1|BA|U|1230
6YDW|1|BA|U|1231
6YDW|1|BA|G|1232
6YDW|1|BA|A|1233
6YDW|1|BA|U|1234
6YDW|1|BA|C|1235
6YDW|1|BA|C|1236
*
6YDW|1|BA|G|1245
6YDW|1|BA|A|1246
6YDW|1|BA|U|1247
6YDW|1|BA|C|1248
6YDW|1|BA|A|1249
6YDW|1|BA|A|1250
6YDW|1|BA|C|1251
6YDW|1|BA|G|1252
6YDW|1|BA|G|1253
6YDW|1|BA|A|1254
6YDW|1|BA|A|1255
6YDW|1|BA|C|1256
6YDW|1|BA|A|1257
6YDW|1|BA|A|1258
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain AY
- tRNAMet
- Chain B0
- Mitochondrial ribosomal protein L27
- Chain B1
- Mitochondrial ribosomal protein L28
- Chain B6
- Uncharacterized protein
- Chain B8
- Mitochondrial ribosomal protein L35
- Chain BD
- Uncharacterized protein
- Chain BP
- Uncharacterized protein
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