J6_6YDW_003
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GAGAAAG*CAACC*GAGAUAGU*AAACG*CUUGAC*GCCCAAUACC
- Length
- 41 nucleotides
- Bulged bases
- 6YDW|1|BA|A|368, 6YDW|1|BA|A|432, 6YDW|1|BA|C|460, 6YDW|1|BA|G|473, 6YDW|1|BA|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YDW|1|BA|G|363
6YDW|1|BA|A|364
6YDW|1|BA|G|365
6YDW|1|BA|A|366
6YDW|1|BA|A|367
6YDW|1|BA|A|368
6YDW|1|BA|G|369
*
6YDW|1|BA|C|380
6YDW|1|BA|A|381
6YDW|1|BA|A|382
6YDW|1|BA|C|383
6YDW|1|BA|C|384
*
6YDW|1|BA|G|427
6YDW|1|BA|A|428
6YDW|1|BA|G|429
6YDW|1|BA|A|430
6YDW|1|BA|U|431
6YDW|1|BA|A|432
6YDW|1|BA|G|433
6YDW|1|BA|U|434
*
6YDW|1|BA|A|457
6YDW|1|BA|A|458
6YDW|1|BA|A|459
6YDW|1|BA|C|460
6YDW|1|BA|G|461
*
6YDW|1|BA|C|470
6YDW|1|BA|U|471
6YDW|1|BA|U|472
6YDW|1|BA|G|473
6YDW|1|BA|A|474
6YDW|1|BA|C|475
*
6YDW|1|BA|G|592
6YDW|1|BA|C|593
6YDW|1|BA|C|594
6YDW|1|BA|C|595
6YDW|1|BA|A|596
6YDW|1|BA|A|597
6YDW|1|BA|U|598
6YDW|1|BA|A|599
6YDW|1|BA|C|600
6YDW|1|BA|C|601
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B0
- Mitochondrial ribosomal protein L27
- Chain B3
- Uncharacterized protein
- Chain B8
- Mitochondrial ribosomal protein L35
- Chain BJ
- Mitochondrial ribosomal protein L10
- Chain BP
- Uncharacterized protein
- Chain BQ
- Uncharacterized protein
- Chain BU
- Mitochondrial ribosomal protein L20
- Chain BV
- Mitochondrial ribosomal protein L21
- Chain Bn
- Mitochondrial ribosomal protein L51
- Chain Bo
- Uncharacterized protein
- Chain Bt
- Mitochondrial ribosomal protein L57
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