J6_6YEF_001
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GC*GCACAC*GGAAGAGAAAG*CGAUU*AAGAG*CUAAAUAC
- Length
- 37 nucleotides
- Bulged bases
- 6YEF|1|A|C|184, 6YEF|1|A|A|226
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YEF|1|A|G|45
6YEF|1|A|C|46
*
6YEF|1|A|G|181
6YEF|1|A|C|182
6YEF|1|A|A|183
6YEF|1|A|C|184
6YEF|1|A|A|185
6YEF|1|A|C|186
*
6YEF|1|A|G|217
6YEF|1|A|G|218
6YEF|1|A|A|219
6YEF|1|A|A|220
6YEF|1|A|G|221
6YEF|1|A|A|222
6YEF|1|A|G|223
6YEF|1|A|A|224
6YEF|1|A|A|225
6YEF|1|A|A|226
6YEF|1|A|G|227
*
6YEF|1|A|C|234
6YEF|1|A|G|235
6YEF|1|A|A|236
6YEF|1|A|U|237
6YEF|1|A|U|238
*
6YEF|1|A|A|265
6YEF|1|A|A|266
6YEF|1|A|G|267
6YEF|1|A|A|268
6YEF|1|A|G|269
*
6YEF|1|A|C|472
6YEF|1|A|U|473
6YEF|1|A|A|474
6YEF|1|A|A|475
6YEF|1|A|A|476
6YEF|1|A|U|477
6YEF|1|A|A|478
6YEF|1|A|C|479
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
- Chain F
- 50S ribosomal protein L4
Coloring options: