J6_6YS3_001

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6YS3|1|b|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YS3|1|b|G|45
6YS3|1|b|G|46
*
6YS3|1|b|C|179
6YS3|1|b|G|180
6YS3|1|b|A|181
6YS3|1|b|A|182
6YS3|1|b|C|183
*
6YS3|1|b|G|214
6YS3|1|b|G|215
6YS3|1|b|A|216
6YS3|1|b|A|217
6YS3|1|b|A|218
6YS3|1|b|A|219
6YS3|1|b|G|220
6YS3|1|b|A|221
6YS3|1|b|A|222
6YS3|1|b|A|223
6YS3|1|b|U|224
*
6YS3|1|b|A|231
6YS3|1|b|G|232
6YS3|1|b|A|233
6YS3|1|b|U|234
6YS3|1|b|U|235
*
6YS3|1|b|A|262
6YS3|1|b|G|263
6YS3|1|b|C|264
6YS3|1|b|A|265
6YS3|1|b|G|266
*
6YS3|1|b|C|426
6YS3|1|b|U|427
6YS3|1|b|A|428
6YS3|1|b|A|429
6YS3|1|b|A|430
6YS3|1|b|U|431
6YS3|1|b|A|432
6YS3|1|b|C|433

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34