J6_6YSI_002
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UUUA*UUUG*CU*AGUA*UCUUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 6YSI|1|1|U|2065, 6YSI|1|1|A|2377, 6YSI|1|1|U|2379, 6YSI|1|1|G|2417, 6YSI|1|1|A|2419, 6YSI|1|1|U|2420
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YSI|1|1|U|2063
6YSI|1|1|U|2064
6YSI|1|1|U|2065
6YSI|1|1|A|2066
*
6YSI|1|1|U|2232
6YSI|1|1|U|2233
6YSI|1|1|U|2234
6YSI|1|1|G|2235
*
6YSI|1|1|C|2247
6YSI|1|1|U|2248
*
6YSI|1|1|A|2270
6YSI|1|1|G|2271
6YSI|1|1|U|2272
6YSI|1|1|A|2273
*
6YSI|1|1|U|2373
6YSI|1|1|C|2374
6YSI|1|1|U|2375
6YSI|1|1|U|2376
6YSI|1|1|A|2377
6YSI|1|1|G|2378
6YSI|1|1|U|2379
6YSI|1|1|G|2380
6YSI|1|1|A|2381
6YSI|1|1|U|2382
6YSI|1|1|C|2383
6YSI|1|1|C|2384
*
6YSI|1|1|G|2410
6YSI|1|1|C|2411
6YSI|1|1|U|2412
6YSI|1|1|C|2413
6YSI|1|1|A|2414
6YSI|1|1|A|2415
6YSI|1|1|C|2416
6YSI|1|1|G|2417
6YSI|1|1|G|2418
6YSI|1|1|A|2419
6YSI|1|1|U|2420
6YSI|1|1|A|2421
6YSI|1|1|A|2422
6YSI|1|1|A|2423
6YSI|1|1|A|2424
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 8
- Transfer RNA; tRNA
- Chain A
- 50S ribosomal protein L2
- Chain H
- 50S ribosomal protein L15
- Chain S
- 50S ribosomal protein L27
- Chain T
- 50S ribosomal protein L28
- Chain Y
- 50S ribosomal protein L33
- Chain a
- 50S ribosomal protein L35
Coloring options: