J6_6YSS_001

3D structure

PDB id

6YSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6YSS|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YSS|1|A|G|45
6YSS|1|A|G|46
*
6YSS|1|A|C|179
6YSS|1|A|G|180
6YSS|1|A|A|181
6YSS|1|A|A|182
6YSS|1|A|C|183
*
6YSS|1|A|G|214
6YSS|1|A|G|215
6YSS|1|A|A|216
6YSS|1|A|A|217
6YSS|1|A|A|218
6YSS|1|A|A|219
6YSS|1|A|G|220
6YSS|1|A|A|221
6YSS|1|A|A|222
6YSS|1|A|A|223
6YSS|1|A|U|224
*
6YSS|1|A|A|231
6YSS|1|A|G|232
6YSS|1|A|A|233
6YSS|1|A|U|234
6YSS|1|A|U|235
*
6YSS|1|A|A|262
6YSS|1|A|G|263
6YSS|1|A|C|264
6YSS|1|A|A|265
6YSS|1|A|G|266
*
6YSS|1|A|C|426
6YSS|1|A|U|427
6YSS|1|A|A|428
6YSS|1|A|A|429
6YSS|1|A|A|430
6YSS|1|A|U|431
6YSS|1|A|A|432
6YSS|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34