J6_6YST_001

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6YST|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YST|1|A|G|45
6YST|1|A|G|46
*
6YST|1|A|C|179
6YST|1|A|G|180
6YST|1|A|A|181
6YST|1|A|A|182
6YST|1|A|C|183
*
6YST|1|A|G|214
6YST|1|A|G|215
6YST|1|A|A|216
6YST|1|A|A|217
6YST|1|A|A|218
6YST|1|A|A|219
6YST|1|A|G|220
6YST|1|A|A|221
6YST|1|A|A|222
6YST|1|A|A|223
6YST|1|A|U|224
*
6YST|1|A|A|231
6YST|1|A|G|232
6YST|1|A|A|233
6YST|1|A|U|234
6YST|1|A|U|235
*
6YST|1|A|A|262
6YST|1|A|G|263
6YST|1|A|C|264
6YST|1|A|A|265
6YST|1|A|G|266
*
6YST|1|A|C|426
6YST|1|A|U|427
6YST|1|A|A|428
6YST|1|A|A|429
6YST|1|A|A|430
6YST|1|A|U|431
6YST|1|A|A|432
6YST|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34