J6_6Z1P_002
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUC*GUUGGUAA*UUAAUAAACU*AGAAU*AUAAG*CUUGUAAA
- Length
- 39 nucleotides
- Bulged bases
- 6Z1P|1|Aa|U|127, 6Z1P|1|Aa|U|163, 6Z1P|1|Aa|C|170, 6Z1P|1|Ab|G|335, 6Z1P|1|Ab|U|336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Z1P|1|Aa|U|46
6Z1P|1|Aa|U|47
6Z1P|1|Aa|C|48
*
6Z1P|1|Aa|G|125
6Z1P|1|Aa|U|126
6Z1P|1|Aa|U|127
6Z1P|1|Aa|G|128
6Z1P|1|Aa|G|129
6Z1P|1|Aa|U|130
6Z1P|1|Aa|A|131
6Z1P|1|Aa|A|132
*
6Z1P|1|Aa|U|162
6Z1P|1|Aa|U|163
6Z1P|1|Aa|A|164
6Z1P|1|Aa|A|165
6Z1P|1|Aa|U|166
6Z1P|1|Aa|A|167
6Z1P|1|Aa|A|168
6Z1P|1|Aa|A|169
6Z1P|1|Aa|C|170
6Z1P|1|Aa|U|171
*
6Z1P|1|Aa|A|178
6Z1P|1|Aa|G|179
6Z1P|1|Aa|A|180
6Z1P|1|Aa|A|181
6Z1P|1|Aa|U|182
*
6Z1P|1|Aa|A|205
6Z1P|1|Aa|U|206
6Z1P|1|Aa|A|207
6Z1P|1|Aa|A|208
6Z1P|1|Aa|G|209
*
6Z1P|1|Ab|C|332
6Z1P|1|Ab|U|333
6Z1P|1|Ab|U|334
6Z1P|1|Ab|G|335
6Z1P|1|Ab|U|336
6Z1P|1|Ab|A|337
6Z1P|1|Ab|A|338
6Z1P|1|Ab|A|339
Current chains
- Chain Aa
- LSU rRNA_1
- Chain Ab
- LSU rRNA_2
Nearby chains
- Chain AB
- Ribosomal protein L28
- Chain AC
- 39-S ribosomal protein L47
- Chain AF
- bL35m
- Chain AI
- Ribosomal protein L27
- Chain AO
- mL64
- Chain AP
- mL101
- Chain Aq
- Ribosomal protein L15, putative
Coloring options: