J6_6Z6K_001
3D structure
- PDB id
- 6Z6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 6Z6K|1|C1|A|67, 6Z6K|1|C1|U|329, 6Z6K|1|C3|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Z6K|1|C1|G|22
6Z6K|1|C1|A|23
6Z6K|1|C1|G|24
6Z6K|1|C1|U|25
6Z6K|1|C1|A|26
6Z6K|1|C1|C|27
*
6Z6K|1|C1|G|58
6Z6K|1|C1|G|59
6Z6K|1|C1|A|60
6Z6K|1|C1|A|61
6Z6K|1|C1|A|62
6Z6K|1|C1|A|63
6Z6K|1|C1|G|64
6Z6K|1|C1|A|65
6Z6K|1|C1|A|66
6Z6K|1|C1|A|67
6Z6K|1|C1|C|68
*
6Z6K|1|C1|G|75
6Z6K|1|C1|G|76
6Z6K|1|C1|A|77
6Z6K|1|C1|U|78
6Z6K|1|C1|U|79
*
6Z6K|1|C1|A|106
6Z6K|1|C1|A|107
6Z6K|1|C1|A|108
6Z6K|1|C1|A|109
6Z6K|1|C1|G|110
*
6Z6K|1|C1|C|321
6Z6K|1|C1|U|322
6Z6K|1|C1|A|323
6Z6K|1|C1|A|324
6Z6K|1|C1|A|325
6Z6K|1|C1|U|326
6Z6K|1|C1|A|327
6Z6K|1|C1|U|328
6Z6K|1|C1|U|329
6Z6K|1|C1|G|330
6Z6K|1|C1|G|331
*
6Z6K|1|C3|C|32
6Z6K|1|C3|A|33
6Z6K|1|C3|U|34
6Z6K|1|C3|C|35
Current chains
- Chain C1
- 25S rRNA
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-A
- Chain LL
- 60S ribosomal protein L13-A
- Chain LN
- 60S ribosomal protein L15-A
- Chain Lh
- 60S ribosomal protein L35-A
- Chain Li
- 60S ribosomal protein L36-A
- Chain Lj
- 60S ribosomal protein L37-A
Coloring options: