J6_6ZJ3_002

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UAGAG*CCAUU*ACGUUCGACCCAG*UGUA*UGCUGG*CUU(OMG)A

Length

38 nucleotides

Bulged bases

6ZJ3|1|S1|A|156, 6ZJ3|1|S1|U|157, 6ZJ3|1|S1|G|195, 6ZJ3|1|S1|U|267

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|S1|U|124
6ZJ3|1|S1|A|125
6ZJ3|1|S1|G|126
6ZJ3|1|S1|A|127
6ZJ3|1|S1|G|128
*
6ZJ3|1|S1|C|154
6ZJ3|1|S1|C|155
6ZJ3|1|S1|A|156
6ZJ3|1|S1|U|157
6ZJ3|1|S1|U|158
*
6ZJ3|1|S1|A|189
6ZJ3|1|S1|C|190
6ZJ3|1|S1|G|191
6ZJ3|1|S1|U|192
6ZJ3|1|S1|U|193
6ZJ3|1|S1|C|194
6ZJ3|1|S1|G|195
6ZJ3|1|S1|A|196
6ZJ3|1|S1|C|197
6ZJ3|1|S1|C|198
6ZJ3|1|S1|C|199
6ZJ3|1|S1|A|200
6ZJ3|1|S1|G|201
*
6ZJ3|1|S1|U|265
6ZJ3|1|S1|G|266
6ZJ3|1|S1|U|267
6ZJ3|1|S1|A|268
*
6ZJ3|1|S1|U|350
6ZJ3|1|S1|G|351
6ZJ3|1|S1|C|352
6ZJ3|1|S1|U|353
6ZJ3|1|S1|G|354
6ZJ3|1|S1|G|355
*
6ZJ3|1|S1|C|387
6ZJ3|1|S1|U|388
6ZJ3|1|S1|U|389
6ZJ3|1|S1|OMG|390
6ZJ3|1|S1|A|391

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SG

Ribosomal protein eS6

Chain SK

Ribosomal protein eS8