3D structure

PDB id
6ZME (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
Length
27 nucleotides
Bulged bases
6ZME|1|L5|C|1501, 6ZME|1|L5|G|1502
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6ZME|1|L5|C|1352
6ZME|1|L5|G|1353
6ZME|1|L5|A|1354
6ZME|1|L5|G|1355
*
6ZME|1|L5|C|1384
6ZME|1|L5|G|1385
6ZME|1|L5|C|1386
6ZME|1|L5|A|1387
6ZME|1|L5|A|1388
*
6ZME|1|L5|U|1395
6ZME|1|L5|G|1396
6ZME|1|L5|A|1397
6ZME|1|L5|A|1398
6ZME|1|L5|G|1399
*
6ZME|1|L5|C|1418
6ZME|1|L5|G|1419
6ZME|1|L5|A|1420
6ZME|1|L5|G|1421
*
6ZME|1|L5|C|1464
6ZME|1|L5|G|1465
6ZME|1|L5|G|1466
*
6ZME|1|L5|C|1499
6ZME|1|L5|A|1500
6ZME|1|L5|C|1501
6ZME|1|L5|G|1502
6ZME|1|L5|A|1503
6ZME|1|L5|G|1504

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LL
60S ribosomal protein L13
Chain LQ
60S ribosomal protein L18
Chain La
60S ribosomal protein L27a
Chain Lb
60S ribosomal protein L29
Chain Li
60S ribosomal protein L36

Coloring options:

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