3D structure

PDB id
6ZTM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in collided state without NusG
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
6ZTM|1|BA|U|2076, 6ZTM|1|BA|A|2388, 6ZTM|1|BA|U|2390, 6ZTM|1|BA|G|2428, 6ZTM|1|BA|A|2430, 6ZTM|1|BA|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6ZTM|1|BA|U|2074
6ZTM|1|BA|U|2075
6ZTM|1|BA|U|2076
6ZTM|1|BA|A|2077
*
6ZTM|1|BA|U|2243
6ZTM|1|BA|U|2244
6ZTM|1|BA|U|2245
6ZTM|1|BA|G|2246
*
6ZTM|1|BA|C|2258
6ZTM|1|BA|U|2259
*
6ZTM|1|BA|A|2281
6ZTM|1|BA|G|2282
6ZTM|1|BA|C|2283
6ZTM|1|BA|A|2284
*
6ZTM|1|BA|U|2384
6ZTM|1|BA|C|2385
6ZTM|1|BA|A|2386
6ZTM|1|BA|U|2387
6ZTM|1|BA|A|2388
6ZTM|1|BA|G|2389
6ZTM|1|BA|U|2390
6ZTM|1|BA|G|2391
6ZTM|1|BA|A|2392
6ZTM|1|BA|U|2393
6ZTM|1|BA|C|2394
6ZTM|1|BA|C|2395
*
6ZTM|1|BA|G|2421
6ZTM|1|BA|C|2422
6ZTM|1|BA|U|2423
6ZTM|1|BA|C|2424
6ZTM|1|BA|A|2425
6ZTM|1|BA|A|2426
6ZTM|1|BA|C|2427
6ZTM|1|BA|G|2428
6ZTM|1|BA|G|2429
6ZTM|1|BA|A|2430
6ZTM|1|BA|U|2431
6ZTM|1|BA|A|2432
6ZTM|1|BA|A|2433
6ZTM|1|BA|A|2434
6ZTM|1|BA|A|2435

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B3
50S ribosomal protein L33
Chain B5
50S ribosomal protein L35
Chain BC
50S ribosomal protein L2
Chain BM
50S ribosomal protein L15
Chain BX
50S ribosomal protein L27
Chain BY
50S ribosomal protein L28

Coloring options:

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