J6_6ZVJ_002
3D structure
- PDB id
- 6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human ABCE1-bound 43S pre-initiation complex - State II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGGAUCUUGG*CU*GCGUU*AUGGAAUAGG*CAUGAUUAAGAG*CAUUA
- Length
- 44 nucleotides
- Bulged bases
- 6ZVJ|1|2|U|688, 6ZVJ|1|2|G|798, 6ZVJ|1|2|A|869, 6ZVJ|1|2|U|871, 6ZVJ|1|2|G|873, 6ZVJ|1|2|A|913, 6ZVJ|1|2|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVJ|1|2|U|682
6ZVJ|1|2|G|683
6ZVJ|1|2|G|684
6ZVJ|1|2|A|685
6ZVJ|1|2|U|686
6ZVJ|1|2|C|687
6ZVJ|1|2|U|688
6ZVJ|1|2|U|689
6ZVJ|1|2|G|690
6ZVJ|1|2|G|691
*
6ZVJ|1|2|C|739
6ZVJ|1|2|U|747
*
6ZVJ|1|2|G|796
6ZVJ|1|2|C|797
6ZVJ|1|2|G|798
6ZVJ|1|2|U|799
6ZVJ|1|2|U|800
*
6ZVJ|1|2|A|865
6ZVJ|1|2|U|866
6ZVJ|1|2|G|867
6ZVJ|1|2|G|868
6ZVJ|1|2|A|869
6ZVJ|1|2|A|870
6ZVJ|1|2|U|871
6ZVJ|1|2|A|872
6ZVJ|1|2|G|873
6ZVJ|1|2|G|874
*
6ZVJ|1|2|C|912
6ZVJ|1|2|A|913
6ZVJ|1|2|U|914
6ZVJ|1|2|G|915
6ZVJ|1|2|A|916
6ZVJ|1|2|U|917
6ZVJ|1|2|U|918
6ZVJ|1|2|A|919
6ZVJ|1|2|A|920
6ZVJ|1|2|G|921
6ZVJ|1|2|A|922
6ZVJ|1|2|G|923
*
6ZVJ|1|2|C|1019
6ZVJ|1|2|A|1020
6ZVJ|1|2|U|1021
6ZVJ|1|2|U|1022
6ZVJ|1|2|A|1023
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain R
- 40S ribosomal protein S27
- Chain f
- 40S ribosomal protein S15a
- Chain j
- 40S ribosomal protein S23
- Chain m
- 40S ribosomal protein S13
- Chain n
- 40S ribosomal protein S11
- Chain s
- 40S ribosomal protein S7
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