J6_6ZVK_001
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 6ZVK|1|e2|A|66, 6ZVK|1|h2|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|e2|G|21
6ZVK|1|e2|G|22
6ZVK|1|e2|C|23
6ZVK|1|e2|G|24
6ZVK|1|e2|A|25
6ZVK|1|e2|C|26
*
6ZVK|1|e2|G|57
6ZVK|1|e2|G|58
6ZVK|1|e2|A|59
6ZVK|1|e2|G|60
6ZVK|1|e2|A|61
6ZVK|1|e2|A|62
6ZVK|1|e2|G|63
6ZVK|1|e2|A|64
6ZVK|1|e2|A|65
6ZVK|1|e2|A|66
6ZVK|1|e2|C|67
*
6ZVK|1|e2|G|74
6ZVK|1|e2|G|75
6ZVK|1|e2|A|76
6ZVK|1|e2|U|77
6ZVK|1|e2|U|78
*
6ZVK|1|e2|A|105
6ZVK|1|e2|A|106
6ZVK|1|e2|G|107
6ZVK|1|e2|A|108
6ZVK|1|e2|G|109
*
6ZVK|1|e2|C|332
6ZVK|1|e2|U|333
6ZVK|1|e2|A|334
6ZVK|1|e2|A|335
6ZVK|1|e2|A|336
6ZVK|1|e2|U|337
6ZVK|1|e2|A|338
6ZVK|1|e2|C|339
*
6ZVK|1|h2|G|33
6ZVK|1|h2|U|34
6ZVK|1|h2|C|35
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
- Chain h2
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain A2
- uL29
- Chain B2
- 60S ribosomal protein L36
- Chain C2
- Ribosomal protein L37
- Chain a7
- 60S ribosomal protein L13
- Chain t2
- uL4
Coloring options: