J6_6ZVK_002

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG

Length

27 nucleotides

Bulged bases

6ZVK|1|e2|C|1501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|C|1352
6ZVK|1|e2|G|1353
6ZVK|1|e2|A|1354
6ZVK|1|e2|G|1355
*
6ZVK|1|e2|C|1384
6ZVK|1|e2|G|1385
6ZVK|1|e2|C|1386
6ZVK|1|e2|A|1387
6ZVK|1|e2|A|1388
*
6ZVK|1|e2|U|1395
6ZVK|1|e2|G|1396
6ZVK|1|e2|A|1397
6ZVK|1|e2|A|1398
6ZVK|1|e2|G|1399
*
6ZVK|1|e2|C|1418
6ZVK|1|e2|G|1419
6ZVK|1|e2|A|1420
6ZVK|1|e2|G|1421
*
6ZVK|1|e2|C|1464
6ZVK|1|e2|G|1465
6ZVK|1|e2|G|1466
*
6ZVK|1|e2|C|1499
6ZVK|1|e2|A|1500
6ZVK|1|e2|C|1501
6ZVK|1|e2|G|1502
6ZVK|1|e2|A|1503
6ZVK|1|e2|G|1504

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain S2

60S RIBOSOMAL PROTEIN EL18

Chain a7

60S ribosomal protein L13

Chain q2

uL15

Chain r2

60S ribosomal protein L29

Chain t2

uL4