J6_7A01_002
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 7A01|1|e2|G|3922, 7A01|1|e2|A|4376, 7A01|1|e2|A|4378, 7A01|1|e2|A|4379, 7A01|1|e2|A|4380
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|e2|U|3920
7A01|1|e2|U|3921
7A01|1|e2|G|3922
7A01|1|e2|A|3923
*
7A01|1|e2|U|4188
7A01|1|e2|U|4189
7A01|1|e2|U|4190
7A01|1|e2|G|4191
*
7A01|1|e2|C|4204
7A01|1|e2|A|4205
*
7A01|1|e2|U|4227
7A01|1|e2|G|4228
7A01|1|e2|U|4229
7A01|1|e2|C|4230
*
7A01|1|e2|G|4331
7A01|1|e2|C|4332
7A01|1|e2|C|4333
7A01|1|e2|U|4334
7A01|1|e2|C|4335
7A01|1|e2|A|4336
7A01|1|e2|C|4337
7A01|1|e2|G|4338
7A01|1|e2|A|4339
7A01|1|e2|U|4340
7A01|1|e2|C|4341
7A01|1|e2|C|4342
*
7A01|1|e2|G|4370
7A01|1|e2|G|4371
7A01|1|e2|U|4372
7A01|1|e2|G|4373
7A01|1|e2|U|4374
7A01|1|e2|C|4375
7A01|1|e2|A|4376
7A01|1|e2|G|4377
7A01|1|e2|A|4378
7A01|1|e2|A|4379
7A01|1|e2|A|4380
7A01|1|e2|A|4381
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain 72
- eL21
- Chain 92
- Uncharacterized protein
- Chain F2
- eL42
- Chain S2
- 60S RIBOSOMAL PROTEIN EL18
- Chain q2
- uL15
- Chain r2
- 60S ribosomal protein L29
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