J6_7AS8_002

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GCUUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

7AS8|1|A|U|2105, 7AS8|1|A|U|2419, 7AS8|1|A|G|2457, 7AS8|1|A|A|2459, 7AS8|1|A|U|2460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AS8|1|A|U|2103
7AS8|1|A|U|2104
7AS8|1|A|U|2105
7AS8|1|A|A|2106
*
7AS8|1|A|U|2272
7AS8|1|A|U|2273
7AS8|1|A|U|2274
7AS8|1|A|G|2275
*
7AS8|1|A|C|2287
7AS8|1|A|G|2288
*
7AS8|1|A|C|2310
7AS8|1|A|G|2311
7AS8|1|A|C|2312
7AS8|1|A|C|2313
*
7AS8|1|A|G|2413
7AS8|1|A|C|2414
7AS8|1|A|U|2415
7AS8|1|A|U|2416
7AS8|1|A|A|2417
7AS8|1|A|G|2418
7AS8|1|A|U|2419
7AS8|1|A|G|2420
7AS8|1|A|A|2421
7AS8|1|A|U|2422
7AS8|1|A|C|2423
7AS8|1|A|C|2424
*
7AS8|1|A|G|2450
7AS8|1|A|C|2451
7AS8|1|A|U|2452
7AS8|1|A|C|2453
7AS8|1|A|A|2454
7AS8|1|A|A|2455
7AS8|1|A|C|2456
7AS8|1|A|G|2457
7AS8|1|A|G|2458
7AS8|1|A|A|2459
7AS8|1|A|U|2460
7AS8|1|A|A|2461
7AS8|1|A|A|2462
7AS8|1|A|A|2463
7AS8|1|A|A|2464

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2

Chain P

50S ribosomal protein L15

Chain a

50S ribosomal protein L27

Chain b

50S ribosomal protein L28

Chain g

50S ribosomal protein L33 1

Chain i

50S ribosomal protein L35