J6_7AZS_002

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

7AZS|1|23SA|U|2101, 7AZS|1|23SA|A|2403, 7AZS|1|23SA|U|2405, 7AZS|1|23SA|G|2443, 7AZS|1|23SA|A|2445, 7AZS|1|23SA|U|2446

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AZS|1|23SA|U|2099
7AZS|1|23SA|U|2100
7AZS|1|23SA|U|2101
7AZS|1|23SA|A|2102
*
7AZS|1|23SA|U|2258
7AZS|1|23SA|U|2259
7AZS|1|23SA|U|2260
7AZS|1|23SA|G|2261
*
7AZS|1|23SA|C|2273
7AZS|1|23SA|G|2274
*
7AZS|1|23SA|C|2296
7AZS|1|23SA|G|2297
7AZS|1|23SA|C|2298
7AZS|1|23SA|C|2299
*
7AZS|1|23SA|G|2399
7AZS|1|23SA|C|2400
7AZS|1|23SA|C|2401
7AZS|1|23SA|U|2402
7AZS|1|23SA|A|2403
7AZS|1|23SA|G|2404
7AZS|1|23SA|U|2405
7AZS|1|23SA|G|2406
7AZS|1|23SA|A|2407
7AZS|1|23SA|A|2408
7AZS|1|23SA|C|2409
7AZS|1|23SA|C|2410
*
7AZS|1|23SA|G|2436
7AZS|1|23SA|A|2437
7AZS|1|23SA|U|2438
7AZS|1|23SA|C|2439
7AZS|1|23SA|A|2440
7AZS|1|23SA|A|2441
7AZS|1|23SA|C|2442
7AZS|1|23SA|G|2443
7AZS|1|23SA|G|2444
7AZS|1|23SA|A|2445
7AZS|1|23SA|U|2446
7AZS|1|23SA|A|2447
7AZS|1|23SA|A|2448
7AZS|1|23SA|A|2449
7AZS|1|23SA|A|2450

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain ESIA

Transfer RNA; tRNA

Chain L15A

50S ribosomal protein L15

Chain L27A

50S ribosomal protein L27

Chain L28A

50S ribosomal protein L28

Chain L2A

50S ribosomal protein L2

Chain L33A

50S ribosomal protein L33

Chain L35A

50S ribosomal protein L35