J6_7BV8_003

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

7BV8|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7BV8|1|A|G|45
7BV8|1|A|G|46
*
7BV8|1|A|C|179
7BV8|1|A|G|180
7BV8|1|A|A|181
7BV8|1|A|A|182
7BV8|1|A|C|183
*
7BV8|1|A|G|214
7BV8|1|A|G|215
7BV8|1|A|A|216
7BV8|1|A|A|217
7BV8|1|A|A|218
7BV8|1|A|A|219
7BV8|1|A|G|220
7BV8|1|A|A|221
7BV8|1|A|A|222
7BV8|1|A|A|223
7BV8|1|A|U|224
*
7BV8|1|A|A|231
7BV8|1|A|G|232
7BV8|1|A|A|233
7BV8|1|A|U|234
7BV8|1|A|U|235
*
7BV8|1|A|A|262
7BV8|1|A|G|263
7BV8|1|A|C|264
7BV8|1|A|A|265
7BV8|1|A|G|266
*
7BV8|1|A|C|426
7BV8|1|A|U|427
7BV8|1|A|A|428
7BV8|1|A|A|429
7BV8|1|A|A|430
7BV8|1|A|U|431
7BV8|1|A|A|432
7BV8|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34