J6_7CPV_003
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 7CPV|1|L5|G|3579, 7CPV|1|L5|C|3990, 7CPV|1|L5|A|4029, 7CPV|1|L5|A|4031, 7CPV|1|L5|A|4032
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7CPV|1|L5|U|3577
7CPV|1|L5|U|3578
7CPV|1|L5|G|3579
7CPV|1|L5|A|3580
*
7CPV|1|L5|U|3841
7CPV|1|L5|U|3842
7CPV|1|L5|U|3843
7CPV|1|L5|G|3844
*
7CPV|1|L5|C|3857
7CPV|1|L5|A|3858
*
7CPV|1|L5|U|3880
7CPV|1|L5|G|3881
7CPV|1|L5|U|3882
7CPV|1|L5|C|3883
*
7CPV|1|L5|G|3984
7CPV|1|L5|C|3985
7CPV|1|L5|C|3986
7CPV|1|L5|U|3987
7CPV|1|L5|C|3988
7CPV|1|L5|A|3989
7CPV|1|L5|C|3990
7CPV|1|L5|G|3991
7CPV|1|L5|A|3992
7CPV|1|L5|U|3993
7CPV|1|L5|C|3994
7CPV|1|L5|C|3995
*
7CPV|1|L5|G|4023
7CPV|1|L5|G|4024
7CPV|1|L5|U|4025
7CPV|1|L5|G|4026
7CPV|1|L5|U|4027
7CPV|1|L5|C|4028
7CPV|1|L5|A|4029
7CPV|1|L5|G|4030
7CPV|1|L5|A|4031
7CPV|1|L5|A|4032
7CPV|1|L5|A|4033
7CPV|1|L5|A|4034
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LI
- 60S ribosomal protein L10-like
- Chain LN
- 60S ribosomal protein L15
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L36a
- Chain S6
- Transfer RNA; tRNA
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