J6_7D6Z_001

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

7D6Z|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D6Z|1|A|G|45
7D6Z|1|A|G|46
*
7D6Z|1|A|C|179
7D6Z|1|A|G|180
7D6Z|1|A|A|181
7D6Z|1|A|A|182
7D6Z|1|A|C|183
*
7D6Z|1|A|G|214
7D6Z|1|A|G|215
7D6Z|1|A|A|216
7D6Z|1|A|A|217
7D6Z|1|A|A|218
7D6Z|1|A|A|219
7D6Z|1|A|G|220
7D6Z|1|A|A|221
7D6Z|1|A|A|222
7D6Z|1|A|A|223
7D6Z|1|A|U|224
*
7D6Z|1|A|A|231
7D6Z|1|A|G|232
7D6Z|1|A|A|233
7D6Z|1|A|U|234
7D6Z|1|A|U|235
*
7D6Z|1|A|A|262
7D6Z|1|A|G|263
7D6Z|1|A|C|264
7D6Z|1|A|A|265
7D6Z|1|A|G|266
*
7D6Z|1|A|C|426
7D6Z|1|A|U|427
7D6Z|1|A|A|428
7D6Z|1|A|A|429
7D6Z|1|A|A|430
7D6Z|1|A|U|431
7D6Z|1|A|A|432
7D6Z|1|A|C|433

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain c

50S ribosomal protein L34