J6_7F5S_003
3D structure
- PDB id
- 7F5S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human delta-METTL18 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)UC*GCCU(5MC)ACGAUCC*(OMG)GUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 7F5S|1|L5|G|3922, 7F5S|1|L5|C|4337, 7F5S|1|L5|A|4376, 7F5S|1|L5|A|4378, 7F5S|1|L5|A|4379
- QA status
- Modified nucleotides: PSU, OMU, OMG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7F5S|1|L5|PSU|3920
7F5S|1|L5|U|3921
7F5S|1|L5|G|3922
7F5S|1|L5|A|3923
*
7F5S|1|L5|U|4188
7F5S|1|L5|U|4189
7F5S|1|L5|U|4190
7F5S|1|L5|G|4191
*
7F5S|1|L5|C|4204
7F5S|1|L5|A|4205
*
7F5S|1|L5|OMU|4227
7F5S|1|L5|OMG|4228
7F5S|1|L5|U|4229
7F5S|1|L5|C|4230
*
7F5S|1|L5|G|4331
7F5S|1|L5|C|4332
7F5S|1|L5|C|4333
7F5S|1|L5|U|4334
7F5S|1|L5|5MC|4335
7F5S|1|L5|A|4336
7F5S|1|L5|C|4337
7F5S|1|L5|G|4338
7F5S|1|L5|A|4339
7F5S|1|L5|U|4340
7F5S|1|L5|C|4341
7F5S|1|L5|C|4342
*
7F5S|1|L5|OMG|4370
7F5S|1|L5|G|4371
7F5S|1|L5|U|4372
7F5S|1|L5|G|4373
7F5S|1|L5|U|4374
7F5S|1|L5|C|4375
7F5S|1|L5|A|4376
7F5S|1|L5|G|4377
7F5S|1|L5|A|4378
7F5S|1|L5|A|4379
7F5S|1|L5|A|4380
7F5S|1|L5|A|4381
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LN
- 60S ribosomal protein L15
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L36a
Coloring options: