J6_7JQM_001

3D structure

PDB id

7JQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

7JQM|1|1A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JQM|1|1A|G|44
7JQM|1|1A|C|45
*
7JQM|1|1A|G|179
7JQM|1|1A|G|180
7JQM|1|1A|A|181
7JQM|1|1A|A|182
7JQM|1|1A|C|183
*
7JQM|1|1A|G|214
7JQM|1|1A|G|215
7JQM|1|1A|A|216
7JQM|1|1A|G|217
7JQM|1|1A|A|218
7JQM|1|1A|G|219
7JQM|1|1A|G|220
7JQM|1|1A|A|221
7JQM|1|1A|A|222
7JQM|1|1A|A|223
7JQM|1|1A|G|224
*
7JQM|1|1A|C|231
7JQM|1|1A|G|232
7JQM|1|1A|A|233
7JQM|1|1A|C|234
7JQM|1|1A|U|235
*
7JQM|1|1A|A|262
7JQM|1|1A|C|263
7JQM|1|1A|C|264
7JQM|1|1A|A|265
7JQM|1|1A|G|266
*
7JQM|1|1A|C|426
7JQM|1|1A|U|427
7JQM|1|1A|A|428
7JQM|1|1A|A|429
7JQM|1|1A|G|430
7JQM|1|1A|U|431
7JQM|1|1A|A|432
7JQM|1|1A|C|433

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34