J6_7JSS_001

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

7JSS|1|1|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JSS|1|1|G|45
7JSS|1|1|G|46
*
7JSS|1|1|C|179
7JSS|1|1|G|180
7JSS|1|1|A|181
7JSS|1|1|A|182
7JSS|1|1|C|183
*
7JSS|1|1|G|214
7JSS|1|1|G|215
7JSS|1|1|A|216
7JSS|1|1|A|217
7JSS|1|1|A|218
7JSS|1|1|A|219
7JSS|1|1|G|220
7JSS|1|1|A|221
7JSS|1|1|A|222
7JSS|1|1|A|223
7JSS|1|1|U|224
*
7JSS|1|1|A|231
7JSS|1|1|G|232
7JSS|1|1|A|233
7JSS|1|1|U|234
7JSS|1|1|U|235
*
7JSS|1|1|A|262
7JSS|1|1|G|263
7JSS|1|1|C|264
7JSS|1|1|A|265
7JSS|1|1|G|266
*
7JSS|1|1|C|426
7JSS|1|1|U|427
7JSS|1|1|A|428
7JSS|1|1|A|429
7JSS|1|1|A|430
7JSS|1|1|U|431
7JSS|1|1|A|432
7JSS|1|1|C|433

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34